G-aln¶

How to use on Dardel Gracehopper GPU nodes¶

In order to run it you must use the dardel-gh nodes. In order to check it out use

ssh dardel.pdc.kth.se
ssh logingh
ml PDC
ml galn

Information for parameters is available at https://github.com/bilalbioinfo/galn

Setting the GPUs¶

Galn can use several GPUs and CPUs for running the calculations. See options to set how many GPUs/CPUs you want to run on. galn aln

Send in a batch job¶

#!/bin/bash -l
#SBATCH -A [Allocation]
#SBATCH -p gpugh
#SBATCH -J [Name]
#SBATCH -t [Time]
#SBATCH --nodes=1

ml PDC
ml galn
srun -n 1 galn ...